Dr. Jeffrey F. "Jeff" Dean
Dr. Jeffrey F. "Jeff" Dean
Professor
Professor
Forest Biotechnology
Background
Education:
Ph.D.Purdue University, Department of Biochemistry (Dissertation: Regulation of aromatic amino acid biosynthesis in higher plants: The purification and characterization of DAHP synthases from carrots and spinach) 1986.
B.S. Stanford University, Department of Chemistry, 1980 B.S. Stanford University, Department of Biology, 1980

Professional Experience:
Associate Director, Institute of Bioinformatics, University of Georgia, 20011- present
Graduate Coordinator, Graduate Program in Bioinformatics, 2009- present
Professor, Department of Biochemistry and Molecular Biology, University of Georgia, 2008- present
Professor, Forest Biotechnology, D.B. Warnell School of Forest Resources, University of Georgia, 2006- present
Associate Professor, Forest Biotechnology, D.B. Warnell School of Forestry and Natural Resources, University of Georgia, 2001- present
Adjunct Associate Professor, Department of Biochemistry and Molecular Biology, University of Georgia, 2001- present
Director, The Plant Center, University of Georgia, 2002-2005
Assistant Professor, Forest Biotechnology, D.B. Warnell School of Forestry and Natural Resources, University of Georgia, 1996 - 2001
Associate Research Scientist, Department of Biochemistry and Molecular Biology, University of Georgia, 1990 - 1996
Plant Physiologist (GS-11), Plant Hormone Laboratory, U.S. Department of Agriculture, Beltsville, MD
Publications
Yuan, S; Wang, Y; and Dean, J.F.D. 2011. The gene family of an ACC oxidase expressed in wood-forming tissues of loblolly pine (Pinus taeda L.) contains a nearly identical paralog (NIP). Gene 453:24-36.
Bagal, U.R; Leebens-Mack, J.H; Lorenz, W; and Dean, J.F.D. 2011. "Phylogenomic analysis of the phenylalanine ammonia lyase gene family in loblolly pine (Pinus taeda L.)." IEEE Conference on Bioinformatics and Biomedicine, Atlanta, GA, 2011, pp. (submitted)
Bordeaux, J.M and Dean, J.F.D. 2011. "Susceptibility and response of pines to Sirex noctilio," in The Sirex Woodwasp: Expanding Frontiers. Edited by Slippers, B; Wingfield, M; and De Groot, P, pp. (in press).
Lorenz, W; Alba, R; Yu, Y; Bordeaux, J.M; Simões, M; and Dean, J.F.D. 2011. Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine (P. taeda L.). BMC Genomics 12:264.
MacKay, J and Dean, J.F.D. 2011. "Transcriptomics," in Genetics, Genomics and Breeding of Conifers. Edited by Plomion, C and Bousquet, J, pp. 322-357.
Dean, J.F.D. 2011. "Future prospects," in Genetics, Genomics and Breeding of Conifers. Edited by Plomion, C and Bousquet, J, pp. 404-438.
Yuan, S and Dean, J.F.D. 2010. Loblolly pine (Pinus taeda L.) ACC oxidase gene promoters display differential responses to bending stress and other external stimuli in transgenic Arabidopsis thaliana. L. Planta 232:873-886.
Lorenz, W; Yu, Y; and Dean, J.F.D. 2010. An improved method of RNA isolation from loblolly pine (Pinus taeda L.) and other conifer species. JoVE doi: 10.3791/1751.
Lorenz, W; Johnson, V.E; Ayyampalaym, S; Liang, C; and Dean, J.F.D. 2009. "Progress on enhanced EST resources for loblolly pine (Pinus taeda L.) and other conifers." 30th Biennial Southern Forest Tree Improvement Conference, Blacksburg, VA, 2009, pp. 20-24
Lorenz, W; Yu, Y; Simões, M; and Dean, J.F.D. 2009. Processing the loblolly pine PtGen2 cDNA microarray. JoVE doi: 10.3791/1182.
Nairn, C.J.; Lennon, D.M; Wood-Jones, A; Nairn, A.V; and Dean, J.F.D. 2008. Carbohydrate-related genes and cell wall biosynthesis in vascular tissues of loblolly pine (Pinus taeda L.). Tree Physiol 28:1099-1110.
Barnes, J.R; Lorenz, W; and Dean, J.F.D. 2008. Characterization of a 1-aminocyclopropane-1-carboxylate synthase gene from loblolly pine (Pinus taeda L.). Gene 413:18-31.
Liang, C; Wang, G; Liu, L; Webb, J; Reese, G; and Dean, J.F.D. 2007. WebTraceMiner: a web service for processing and mining EST traces. Nucl. Acid Res doi:10.1093/nar/gkm299.
Liang, C; Wang, G; Liu, L; Carter, K; Webb, J; and Dean, J.F.D. 2007. ConiferEST: a novel, generic bioinformatics system for data processing and mining of conifer expressed sequence tags (ESTs). BMC Genomics 8:134.
Dean, J.F.D. 2006. "Genomics resources for conifers," in Landscapes, Genomics and Transgenic Conifer Forests. Edited by Williams, C.G, pp. 55-74. Dordrecht, Netherlands: Kluwer-Springer Press.
Lorenz, W; Sun, F; Liang, C; Zhao, X; Kolychev, D; Wang, H; Cordonnier-Pratt, M; Pratt, L; and Dean, J.F.D. 2006. Water stress-responsive genes in loblolly pine (Pinus taeda L.) roots identified by analyses of expressed sequence tag libraries. Tree Physiol 26:1-16.
McCaig, B; Meagher, R; and Dean, J.F.D. 2005. Gene structure and molecular analysis of the laccase-type multicopper oxidase gene family in Arabidopsis thaliana. Planta 221:619-636.
Ekman, D; Wolfe, N; and Dean, J.F.D. 2005. Gene expression changes in Arabidopsis thaliana seedling roots exposed to the munition hexhydro-1,3,5-trinitro-1,3,5-triazine. Environ. Sci. Technol. 39:6313-6320.
Hoopes, J and Dean, J.F.D. 2004. Ferroxidase activity in a plant multicopper oxidase. Plant Physiol. Biochem 42:27-33.
Office:
Davison Life Sciences Complex B314B
Phone: 706.542.1710
Fax: 706.542.8356
Lab:
Davison Life Sciences Complex B316
Phone: 706.542.1476
Fax: 706.542.1738